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HistoryAbout
Data exposed: Yale Senselab Size of dump and data set: 216 KB Notes: released without contract
The Semantic Web development of SenseLab involves exporting data from NeuronDB, ModelDB, and BrainPharm to RDF and/or OWL format. The overall goal is to facilitate neuroscience data aggregation, integration, and reasoning using Semantic Web technologies.
This project is part of the current and ongoing SenseLab effort including the following SenseLab team members: Kei Cheung, Huajun Chen, Ernest Lim, Matthias Samwald, Peter Masiar, Luis Marenco, Tom Morse, Nian Liu, Chiquito Crasto, Perry Miller, and Gordon Shepherd.
Openness
No information found.
Resources
The ontologies can also be queried through this SPARQL endpoint
http://neuroweb.med.yale.edu:8890/sparql [downloaded 1 times]
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[obtainable via web page] ★★★★★ "Linked to other data to provide context."★★★★ "Uses URIs to identify things, so that people can link to it."★★★ "Uses non-proprietary formats (e.g., CSV instead of Excel)."★★ "Available as structured data (eg. Excel instead of a scanned table)."★ "Available under an open license."
NeuronDB contains descriptions of anatomic locations, cell architecture and physiologic parameters of neuronal cells based on compartmental models of neurons.
http://purl.org/ycmi/senselab/neuron_ontology.owl [downloaded 1 times]
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[obtainable via web page] ★★★★★ "Linked to other data to provide context."★★★★ "Uses URIs to identify things, so that people can link to it."★★★ "Uses non-proprietary formats (e.g., CSV instead of Excel)."★★ "Available as structured data (eg. Excel instead of a scanned table)."★ "Available under an open license."
ModelDB is a large repository of computational neuroscience models and simulations. The mathematical models in ModelDB are annotated with references to NeuronDB.
http://purl.org/ycmi/senselab/model-db.owl [downloaded 2 times]
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[obtainable via web page] ★★★★★ "Linked to other data to provide context."★★★★ "Uses URIs to identify things, so that people can link to it."★★★ "Uses non-proprietary formats (e.g., CSV instead of Excel)."★★ "Available as structured data (eg. Excel instead of a scanned table)."★ "Available under an open license."
The pilot BrainPharm database is intended to support research on drugs for the treatment of neurological disorders. It enhances the descriptions in a portion of NeuronDB with descriptions...
http://purl.org/ycmi/senselab/brainpharm.owl [downloaded 2 times]
SenseLab conversion into MS Access tables.
http://neuroweb.med.yale.edu/senselab/SenseLab-Public-Snapshot-20071119-2.zip [downloaded 1 times]
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[obtainable via web page] ★★★★★ "Linked to other data to provide context."★★★★ "Uses URIs to identify things, so that people can link to it."★★★ "Uses non-proprietary formats (e.g., CSV instead of Excel)."★★ "Available as structured data (eg. Excel instead of a scanned table)."★ "Available under an open license."
Example resource
http://purl.org/ycmi/senselab/neuron_ontology.owl#GALNR2_Gene [downloaded 1 times]
Additional Information
| Field | Value |
|---|---|
| Source | http://neuroweb.med.yale.edu/senselab/ |
| Author | Kei Cheung |
| Maintainer | Maintainer not given |
| triples | 51227 |
